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bp_generate_histogram.1p

Langue: en

Autres versions - même langue

Version: 2008-06-24 (ubuntu - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME

generate_histogram.pl -- Generate a histogram of Bio::DB::GFF features

SYNOPSIS

   generate_histogram.pl -d gadfly variation gene:curated
 
 

DESCRIPTION

Use this utility to generate feature density histograms from Bio::DB::GFF databases. The result is a GFF data file that is suitable for loading with load_gff.pl.

OPTIONS

The following options are recognized:

   Option        Description
   ------        -----------
 
    --dsn        <dsn>       Data source (default dbi:mysql:test)
    --adaptor    <adaptor>   Schema adaptor (default dbi::mysqlopt)
    --user       <user>      Username for mysql authentication
    --pass       <password>  Password for mysql authentication
    --aggregator <list>      Comma-separated list of aggregators
 
 

BUGS

Please report them.

SEE ALSO

Bio::DB::GFF

AUTHOR

Lincoln Stein <lstein@cshl.org>

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

Car il est de la nature de l'infini que ma nature,
qui est finie et bornée, ne le puisse comprendre.
-+- René Descartes -+-