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bp_generate_histogram.1p

Langue: en

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Version: 2008-06-24 (ubuntu - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME

generate_histogram.pl -- Generate a histogram of Bio::DB::GFF features

SYNOPSIS

   generate_histogram.pl -d gadfly variation gene:curated
 
 

DESCRIPTION

Use this utility to generate feature density histograms from Bio::DB::GFF databases. The result is a GFF data file that is suitable for loading with load_gff.pl.

OPTIONS

The following options are recognized:

   Option        Description
   ------        -----------
 
    --dsn        <dsn>       Data source (default dbi:mysql:test)
    --adaptor    <adaptor>   Schema adaptor (default dbi::mysqlopt)
    --user       <user>      Username for mysql authentication
    --pass       <password>  Password for mysql authentication
    --aggregator <list>      Comma-separated list of aggregators
 
 

BUGS

Please report them.

SEE ALSO

Bio::DB::GFF

AUTHOR

Lincoln Stein <lstein@cshl.org>

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

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