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bp_make_mrna_protein.pl

Langue: en

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Version: 2009-02-27 (fedora - 04/07/09)

Section: 1 (Commandes utilisateur)

NAME

make_mrna_protein - Convert an input mRNA/cDNA sequence into protein

DESCRIPTION

Convert an input mRNA/cDNA sequence into protein using translate()
   -f/--frame           Specifies frame [0,1,2]
 
 

One can also specify:

   -t/--terminator      Stop Codon character (defaults to '*')
   -u/--unknown         Unknown Protein character (defaults to 'X')
   -cds/--fullcds       Expected Full CDS (with start and Stop codon)
   -throwOnError        Throw error if no Full CDS (defaults to 0)
   -if/--format         Input format (defaults to FASTA/Pearson)
   -of/--format         Output format (defaults to FASTA/Pearson)
   -o/--output          Output Filename (defaults to STDOUT)
   -i/--input           Input Filename (defaults to STDIN)
   -ct/--codontable     Codon table to use (defaults to '1')
 
 

See Bio::PrimarySeq for more information on codon tables and the translate() method

AUTHOR - Jason Stajich

   Email jason-at-bioperl-dot-org
 
 
19h39 : Subject: Vends Playstation ==> 1000 frs
19h39 : Subject: Vends Dreamcast ==> 2000 frs
19h42 : Subject: Vends playstation + dreamcast ==> 3000 frs
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