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bp_make_mrna_protein.pl
Langue: en
Version: 2009-02-27 (fedora - 04/07/09)
Section: 1 (Commandes utilisateur)
NAME
make_mrna_protein - Convert an input mRNA/cDNA sequence into proteinDESCRIPTION
Convert an input mRNA/cDNA sequence into protein using translate()-f/--frame Specifies frame [0,1,2]
One can also specify:
-t/--terminator Stop Codon character (defaults to '*') -u/--unknown Unknown Protein character (defaults to 'X') -cds/--fullcds Expected Full CDS (with start and Stop codon) -throwOnError Throw error if no Full CDS (defaults to 0) -if/--format Input format (defaults to FASTA/Pearson) -of/--format Output format (defaults to FASTA/Pearson) -o/--output Output Filename (defaults to STDOUT) -i/--input Input Filename (defaults to STDIN) -ct/--codontable Codon table to use (defaults to '1')
See Bio::PrimarySeq for more information on codon tables and the translate() method
AUTHOR - Jason Stajich
Email jason-at-bioperl-dot-org
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre