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bp_meta_gff.1p

Langue: en

Version: 2009-03-10 (debian - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME

bp_meta_gff.pl - Get/set Bio::DB::GFF meta-data

SYNOPSIS

   # set the following meta data values
   % bp_meta_gff.pl -d testdb tag1=value1 tag2=value2
 
   # get the indicated meta data value
   % bp_meta_gff.pl -d testdb tag1 tag2
 
 

DESCRIPTION

This script gets or sets metadata in a Bio::DB::GFF database. Not all adaptors support this operation! To set a series of tags, pass a set of tag=value pairs to the script. To get the contents of a series of tags, pass the bare tag names.

The output from the get operation will be an easily parseable set of tag=value pairs, one per line.

COMMAND-LINE OPTIONS

Command-line options can be abbreviated to single-letter options. e.g. -d instead of --database.
    --database <dsn>      Mysql database name (default dbi:mysql:test)
    --adaptor <adaptor>   Mysql adaptor (default dbi::mysqlopt)
    --user    <user>      Username for mysql authentication
    --pass    <password>  Password for mysql authentication
 
 

SEE ALSO

Bio::DB::GFF

AUTHOR

Lincoln Stein, lstein@cshl.org

Copyright (c) 2002 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

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