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bp_mrtrans.1p
Langue: en
Version: 2009-03-10 (debian - 07/07/09)
Section: 1 (Commandes utilisateur)
Sommaire
NAME
bp_mrtrans - implement a transformer of alignments from protein to mrna coordinatesSYNOPSIS
Usage:bp_mrtrans -i inputfile -o outputfile [-if input format] [-of output format] [-s cDNA sequence database] [-sf cDNA sequence format] [-h]
DESCRIPTION
This script will convert a protein alignment back into a cDNA. Loosely based on Bill Pearson's mrtrans.The options are:
-o filename - the output filename [default STDOUT] -of format - output sequence format (multiple sequence alignment) [default phylip] -i filename - the input filename [required] -if format - input sequence format (multiple sequence alignment) [ default clustalw] -s --seqdb filename - the cDNA sequence database file -sf --seqformat - the cDNA seq db format (flatfile sequence format) -h - this help menu
AUTHOR
Jason Stajich, jason-at-bioperl-dot-orgContenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre