bp_mrtrans.1p

Langue: en

Version: 2009-03-10 (debian - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME

bp_mrtrans - implement a transformer of alignments from protein to mrna coordinates

SYNOPSIS

Usage:
  bp_mrtrans -i inputfile -o outputfile [-if input format] [-of output format] [-s cDNA sequence database]  [-sf cDNA sequence format] [-h]

DESCRIPTION

This script will convert a protein alignment back into a cDNA. Loosely based on Bill Pearson's mrtrans.

The options are:

    -o filename          - the output filename [default STDOUT]
    -of format           - output sequence format
                           (multiple sequence alignment)
                           [default phylip]
    -i filename          - the input filename [required]
    -if format           - input sequence format
                           (multiple sequence alignment)
                           [ default clustalw]
    -s --seqdb filename  - the cDNA sequence database file
    -sf --seqformat      - the cDNA seq db format (flatfile sequence format)
    -h                   - this help menu
 
 

AUTHOR

Jason Stajich, jason-at-bioperl-dot-org