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bp_multi_hmmsearch.1p
Langue: en
Version: 2008-11-10 (debian - 07/07/09)
Section: 1 (Commandes utilisateur)
Sommaire
NAME
multi_hmmsearch - perform a hmmsearch into multiple FASTA files usingan INDEX file
SYNOPSIS
multi_hmmsearch -p hmm_file [-i] -f index_fileDESCRIPTION
Not technically a Bio::Tools::Run script as this doesn't use any Bioperl or Bioperl-run components but it's useful.Mandatory Options:
-p HMM profile to use for the search. -f INDEX file that contains a list of FASTA files for the multiple search.
Special Options:
-i Create a new index file with the resulting hmms files. This is useful if you want to pass this list as input arguments into another programs. -h Show this documentation.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:http://bugzilla.open-bio.org/
AUTHOR
Mauricio Herrera Cuadra <arareko-at-campus.iztacala.unam.mx>
Contenus ©2006-2024 Benjamin Poulain
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