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bp_multi_hmmsearch.pl.1p

Langue: en

Version: 2009-11-04 (ubuntu - 24/10/10)

Section: 1 (Commandes utilisateur)

NAME

multi_hmmsearch - perform a hmmsearch into multiple FASTA files using
                  an INDEX file

SYNOPSIS

multi_hmmsearch -p hmm_file [-i] -f index_file

DESCRIPTION

Not technically a Bio::Tools::Run script as this doesn't use any Bioperl or Bioperl-run components but it's useful.

Mandatory Options:

   -p  HMM profile to use for the search.
   -f  INDEX file that contains a list of FASTA files for the multiple
       search.
 
 

Special Options:

   -i  Create a new index file with the resulting hmms files. This is
       useful if you want to pass this list as input arguments into
       another programs.
   -h  Show this documentation.
 
 

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
   bioperl-l@bioperl.org                  - General discussion
   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
 
 

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
   http://bugzilla.open-bio.org/
 
 

AUTHOR

   Mauricio Herrera Cuadra <arareko-at-campus.iztacala.unam.mx>
 
 
UNE VIE

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