bp_query_entrez_taxa.pl

Langue: en

Version: 2008-01-11 (mandriva - 01/05/08)

Section: 1 (Commandes utilisateur)

Sommaire

NAME

query_entrez_taxa - query Entrez taxonomy database and print out information

USAGE

query_entrez_taxa ``Homo sapiens'' ``Saccharomyces cerevisiae'' Rhizopus Metazoa query_entrez_taxa -gi 28800981 -gi 54301680 -db nucleotide query_entrez_taxa -gi 71836523 -db protein
  Provide the genus and species name in quotes, you can also query for
  a non-species node like Family or Order
 
 

Command-line options:
   -v or --verbose  : print verbose debugging info
   -gi              : one or many GI numbers to lookup taxon id for
   -db              : the sequence db (nucleotide or protein) the GI is for

    other arguments are assumed to be species names to lookup in taxonomy db
 
 

AUTHOR

Jason Stajich jason-at-bioperl-dot-org