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bp_query_entrez_taxa.pl
Langue: en
Version: 2008-01-11 (mandriva - 01/05/08)
Section: 1 (Commandes utilisateur)
NAME
query_entrez_taxa - query Entrez taxonomy database and print out informationUSAGE
query_entrez_taxa ``Homo sapiens'' ``Saccharomyces cerevisiae'' Rhizopus Metazoa query_entrez_taxa -gi 28800981 -gi 54301680 -db nucleotide query_entrez_taxa -gi 71836523 -db proteinProvide the genus and species name in quotes, you can also query for a non-species node like Family or Order
Command-line options:
-v or --verbose : print verbose debugging info
-gi : one or many GI numbers to lookup taxon id for
-db : the sequence db (nucleotide or protein) the GI is for
other arguments are assumed to be species names to lookup in taxonomy db
AUTHOR
Jason Stajich jason-at-bioperl-dot-orgContenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre