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bp_search2BSML.pl
Langue: en
Version: 2009-02-27 (fedora - 04/07/09)
Section: 1 (Commandes utilisateur)
Sommaire
NAME
search2bsml - Turn SearchIO parseable reports(s) into a BSML reportSYNOPSIS
Usage:search2bsml [-o outputfile] [-f reportformat] [-i inputfilename] OR file1 file2 ..
DESCRIPTION
This script will turn a protein Search report (BLASTP, FASTP, SSEARCH, AXT, WABA, SIM4) into a BSML File.The options are:
-i infilename - (optional) inputfilename, will read either ARGV files or from STDIN -o filename - the output filename [default STDOUT] -f format - search result format (blast, fasta,waba,axt) (ssearch is fasta format). default is blast. -h - this help menu
Additionally specify the filenames you want to process on the command-line. If no files are specified then STDIN input is assumed. You specify this by doing: search2gff < file1 file2 file3
AUTHOR
Jason Stajich, jason-at-bioperl-dot-orgContenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre