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bp_seqret.pl
Langue: en
Version: 2008-01-11 (mandriva - 01/05/08)
Section: 1 (Commandes utilisateur)
NAME
bp_seqret - bioperl implementation of sequence fetch from local db (like EMBOSS seqret)USAGE
bp_seqret [-f/--format outputformat] [-o/--out/--outfile outfile] [-d/--db dbname] [-i/--id/-s/--seqname seqname1]Example usage:
bp_seqret -f fasta -db db.fa -i seq1 -i seq2 > output.fas bp_seqret db.fa:seq1 output.fas bp_seqret db.fa:seq1 -o output.fas bp_seqret -db db.fa -o output.fas seq1 seq2 seq3 bp_seqret -db db.fa seq1 seq2 seq3 output.fas bp_seqret -db db.fa seq1 seq2 seq3 - > output.fas
The DB is expected to be a Fasta formatted sequence file with multiple sequences.
Output format is Fasta by default.
If no output filename is provided then output is written to STDOUT. Providing '-' as the output filename will accomplish the same thing.
AUTHOR
Jason Stajich jason_AT_bioperl-dot-orgContenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre