Rechercher une page de manuel
cathparse
Langue: en
Version: 09/25/2007 (debian - 07/07/09)
Section: 1 (Commandes utilisateur)
NAME
cathparse - Generates DCF file from raw CATH files.SYNOPSIS
- cathparse -listfile infile -domfile infile -namesfile infile -outfile outfile -logfile outfile
- cathparse -help
DESCRIPTION
cathparse
- is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Utils:Database creation" command group(s).
OPTIONS
Input section
-listfile infile
- This option specifies the name of raw CATH classification file (caths.list.vX.X) (input). The raw CATH parsable files (classification and description files) available from ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value: caths.list.v2.4
-domfile infile
- This option specifies the name of raw CATH classification file (domlist.vX.X) (input). The raw CATH parsable files (classification and description files) available from ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value: domlist.v2.4
-namesfile infile
- This option specifies the name of raw CATH classification file (CAT.names.all.vX.X) (input). The raw CATH parsable files (classification and description files) available from ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value: CAT.names.all.v2.4
Output section
-outfile outfile
- This option specifies the name of CATH DCF file (domain classification file) (output). A 'domain classification file' contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS. Default value: Ecath.dat
-logfile outfile
- This option specifies the name of the CATHPARSE log file. Default value: cathparse.log
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
cathparse is fully documented via the tfm(1) system.
AUTHOR
Debian EMBOSS Packaging Team <pkg-emboss-devel@lists.alioth.debian.org>
- Wrote the script used to autogenerate this manual page.
COPYRIGHT
Copyright © 2007 Debian EMBOSS Packaging TeamThis manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre