Rechercher une page de manuel

Chercher une autre page de manuel:

cathparse

Langue: en

Version: 09/25/2007 (debian - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME

cathparse - Generates DCF file from raw CATH files.

SYNOPSIS

cathparse -listfile infile -domfile infile -namesfile infile -outfile outfile -logfile outfile
cathparse -help

DESCRIPTION

cathparse

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Utils:Database creation" command group(s).

OPTIONS

Input section

-listfile infile

This option specifies the name of raw CATH classification file (caths.list.vX.X) (input). The raw CATH parsable files (classification and description files) available from ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value: caths.list.v2.4

-domfile infile

This option specifies the name of raw CATH classification file (domlist.vX.X) (input). The raw CATH parsable files (classification and description files) available from ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value: domlist.v2.4

-namesfile infile

This option specifies the name of raw CATH classification file (CAT.names.all.vX.X) (input). The raw CATH parsable files (classification and description files) available from ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value: CAT.names.all.v2.4

Output section

-outfile outfile

This option specifies the name of CATH DCF file (domain classification file) (output). A 'domain classification file' contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS. Default value: Ecath.dat

-logfile outfile

This option specifies the name of the CATHPARSE log file. Default value: cathparse.log

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

cathparse is fully documented via the tfm(1) system.

AUTHOR

Debian EMBOSS Packaging Team <pkg-emboss-devel@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.
Copyright © 2007 Debian EMBOSS Packaging Team

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

Un intellectuel assis va moins loin qu'un con qui marche.
-+- Michel Audiard -+-