clustalw-mpi

Langue: en

Version: 2008\ June\ 3 (ubuntu - 07/07/09)

Section: 1 (Commandes utilisateur)

Sommaire

NAME

ClustalW-MPI - MPI distributed ClustalW

SYNOPSIS

mpirun [mpirun_options] clustalw-mpi [clustalw options]

DESCRIPTION

ClustalW-MPI is an MPI implementation of ClustalW. It utilizes your networked computers to globally align sets of nucleic or amino acid sequences.

EXAMPLES

To make a full multiple sequence alignment (using one master node and 4 computing nodes):

mpirun -np 5 ./clustalw-mpi -infile=dele.input

To make a guide tree only:

mpirun -np 5 ./clustalw-mpi -infile=dele.input -newtree=dele.mytree

To make a multiple sequence alignment out of an existing tree:

mpirun -np 5 ./clustalw-mpi -infile=dele.input -usetree=dele.mytree

clutalw-mpi is Copyright (C) 2003 by Dr. Kuo-Bin Li, Bioinformatics Institute, Singapure

OPTIONS

See man page for clustalw.

SEE ALSO

clustalw (1)

AUTHORS

Dr. Kuo-Bin Li <kbli@ym.edu.tw>, Bioinformatics Institute, Singapore.