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dsr2html

Langue: en

Version: 257735 (debian - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME

dsr2html - Render DICOM SR file and data set to HTML

SYNOPSIS

 
 dsr2html [options] dsrfile-in [htmlfile-out]
 

DESCRIPTION

The dsr2html utility renders the contents of a DICOM Structured Reporting (SR) document (file format or raw data set) to HTML (Hyper Text Markup Language) which is compatible with version 3.2 or 4.0.

If dsr2html reads a raw data set (DICOM data without a file format meta-header) it will attempt to guess the transfer syntax by examining the first few bytes of the file. It is not always possible to correctly guess the transfer syntax and it is better to convert a data set to a file format whenever possible (using the dcmconv utility). It is also possible to use the -f and -t[ieb] options to force dsr2html to read a dataset with a particular transfer syntax.

PARAMETERS

 
 dsrfile-in    DICOM SR input filename to be rendered
 
 htmlfile-out  HTML output filename (default: stdout)
 

OPTIONS

general options

 
   -h   --help
          print this help text and exit
 
        --version
          print version information and exit
 
   -d   --debug
          debug mode, print debug information
 
   -dd  --verbose-debug
          verbose debug mode, print more details
 

input options

 
 input file format:
 
   +f   --read-file
          read file format or data set (default)
 
   +fo  --read-file-only
          read file format only
 
   -f   --read-dataset
          read data set without file meta information
 
 input transfer syntax:
 
   -t=  --read-xfer-auto
          use TS recognition (default)
 
   -td  --read-xfer-detect
          ignore TS specified in the file meta header
 
   -te  --read-xfer-little
          read with explicit VR little endian TS
 
   -tb  --read-xfer-big
          read with explicit VR big endian TS
 
   -ti  --read-xfer-implicit
          read with implicit VR little endian TS
 

parsing options

 
 additional information:
 
   -Ip  --processing-details
          show currently processed content item
 
 error handling:
 
   -Ec  --ignore-constraints
          ignore relationship content constraints
 
   -Ee  --ignore-item-errors
          do not abort on content item errors, just warn
          (e.g. missing value type specific attributes)
 
   -Ei  --skip-invalid-items
          skip invalid content items (incl. sub-tree)
 
 character set:
 
   +Cr  --charset-require
          require declaration of extended charset (default)
 
   +Ca  --charset-assume  charset: string constant
          (latin-1 to -5, greek, cyrillic, arabic, hebrew)
          assume charset if undeclared ext. charset found
 

output options

 
 HTML compatibility:
 
   +H3  --html-3.2
          use only HTML version 3.2 compatible features
 
   +H4  --html-4.0
          allow all HTML version 4.0 features (default)
 
   +Hd  --add-document-type
          add reference to SGML document type definition
 
 cascading style sheet (CSS), only with HTML 4.0:
 
   +Sr  --css-reference  URL : string
          add reference to specified CSS to HTML page
 
   +Sf  --css-file  filename : string
          embed content of specified CSS into HTML page
 
 general rendering:
 
   +Ri  --expand-inline
          expand short content items inline (default)
 
   -Ri  --never-expand-inline
          never expand content items inline
 
   +Rd  --render-full-data
          render full data of content items
 
 document rendering:
 
   +Dt  --document-type-title
          use document type as document title (default)
 
   +Dp  --patient-info-title
          use patient information as document title
 
   -Dh  --no-document-header
          do not render general document information
 
 code rendering:
 
   +Ci  --render-inline-codes
          render codes in continuous text blocks
 
   +Cn  --concept-name-codes
          render code of concept names
 
   +Cu  --numeric-unit-codes
          render code of numeric measurement units
 
   +Cv  --code-value-unit
          use code value as measurement unit (default)
 
   +Cm  --code-meaning-unit
          use code meaning as measurement unit
 
   +Ca  --render-all-codes
          render all codes (implies +Ci, +Cn and +Cu)
 

NOTES

DICOM Conformance

The dsr2html utility supports the following SOP Classes (according to DICOM 2004 and Supplement 94):
 
 BasicTextSR                 1.2.840.10008.5.1.4.1.1.88.11
 EnhancedSR                  1.2.840.10008.5.1.4.1.1.88.22
 ComprehensiveSR             1.2.840.10008.5.1.4.1.1.88.33
 ProcedureLog                1.2.840.10008.5.1.4.1.1.88.40
 MammographyCADSR            1.2.840.10008.5.1.4.1.1.88.50
 KeyObjectSelectionDocument  1.2.840.10008.5.1.4.1.1.88.59
 ChestCADSR                  1.2.840.10008.5.1.4.1.1.88.65
 XRayRadiationDoseSR         1.2.840.10008.5.1.4.1.1.88.67
 

COMMAND LINE

All command line tools use the following notation for parameters: square brackets enclose optional values (0-1), three trailing dots indicate that multiple values are allowed (1-n), a combination of both means 0 to n values.

Command line options are distinguished from parameters by a leading '+' or '-' sign, respectively. Usually, order and position of command line options are arbitrary (i.e. they can appear anywhere). However, if options are mutually exclusive the rightmost appearance is used. This behaviour conforms to the standard evaluation rules of common Unix shells.

In addition, one or more command files can be specified using an '@' sign as a prefix to the filename (e.g. @command.txt). Such a command argument is replaced by the content of the corresponding text file (multiple whitespaces are treated as a single separator) prior to any further evaluation. Please note that a command file cannot contain another command file. This simple but effective approach allows to summarize common combinations of options/parameters and avoids longish and confusing command lines (an example is provided in file share/data/dumppat.txt).

ENVIRONMENT

The dsr2html utility will attempt to load DICOM data dictionaries specified in the DCMDICTPATH environment variable. By default, i.e. if the DCMDICTPATH environment variable is not set, the file <PREFIX>/lib/dicom.dic will be loaded unless the dictionary is built into the application (default for Windows).

The default behaviour should be preferred and the DCMDICTPATH environment variable only used when alternative data dictionaries are required. The DCMDICTPATH environment variable has the same format as the Unix shell PATH variable in that a colon (':') separates entries. The data dictionary code will attempt to load each file specified in the DCMDICTPATH environment variable. It is an error if no data dictionary can be loaded.

SEE ALSO

dcmconv(1)

Copyright (C) 2000-2005 by Kuratorium OFFIS e.V., Escherweg 2, 26121 Oldenburg, Germany.

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