entrcmd

Langue: en

Version: 111110 (mandriva - 01/05/08)

Section: 1 (Commandes utilisateur)

NAME

entrcmd - non-interactive command line interface for Entrez

SYNOPSIS

entrcmd [-] [-c] [-d str] [-e str] [-f] [-g F] [-h] [-i str] [-l str] [-n filename] [-o filename] -p str [-r] [-s] [-t str] [-u str] [-w str] [-x str] [-y N]

DESCRIPTION

entrcmd is a non-interactive command-line interface which allows a user to perform a series of neighboring and output operations, based upon an initial set of UIDs or a boolean expression which describes a set of UIDs. Alternatively, it can be used to display an alphabetically sorted list of terms near an initial term.

OPTIONS

A summary of options is included below.
-
Print usage message
-c
'Check' WWW output Forms
-d str
Initial database (default = m)
-e str
Boolean expression
-f
For WWW output, use Forms
-g F
Do not use WWW-style encoding for special input characters
-h
Print detailed help. Requires, but ignores, -p str
-i str
Comma-delimited list of files to import for named UID list
-l str
Taxonomy lookup string
-n filename
On-the-fly neighboring from filename
-o filename
Output file (default = stdout)
-p str
Program of commands
-r
Get sequences from ID Repository
-s
Display status report
-t str
Produce a list of terms
-u str
Comma-delimited list of UIDs
-w str
Produce WWW/HTML formatted output, using str (/htbin is recommended) as the directory prefix for linked hypertext items.
-x str
Name of export file for named UID list
-y N
Complexity:
1
bioseq only
2
bioseq set
3
nuc-prot set (default)

AUTHOR

The National Center for Biotechnology Information.