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fdnapars.1e
Langue: en
Version: 08/04/2009 (ubuntu - 24/10/10)
Section: 1 (Commandes utilisateur)
Sommaire
NAME
fdnapars - DNA parsimony algorithmSYNOPSIS
- fdnapars -sequence seqsetall -intreefile tree [-weights properties] [-maxtrees integer] -thorough toggle -rearrange boolean [-transversion boolean] -njumble integer -seed integer [-outgrno integer] [-thresh toggle] -threshold float -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean] [-stepbox boolean] [-ancseq boolean] [-treeprint boolean] -dotdiff boolean
- fdnapars -help
DESCRIPTION
fdnapars
- is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Molecular sequence" command group(s).
OPTIONS
Input section
-sequence seqsetall
- File containing one or more sequence alignments
-intreefile tree
-weights properties
Additional section
-maxtrees integer
- Default value: 10000
-thorough toggle
- Default value: Y
-rearrange boolean
- Default value: Y
-transversion boolean
- Default value: N
-njumble integer
-seed integer
- Default value: 1
-outgrno integer
-thresh toggle
- Default value: N
-threshold float
- Default value: 1.0
Output section
-outfile outfile
-trout toggle
- Default value: Y
-outtreefile outfile
-printdata boolean
- Default value: N
-progress boolean
- Default value: Y
-stepbox boolean
- Default value: N
-ancseq boolean
- Default value: N
-treeprint boolean
- Default value: Y
-dotdiff boolean
- Default value: Y
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
fdnapars is fully documented via the tfm(1) system.
AUTHOR
Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
- Wrote the script used to autogenerate this manual page.
COPYRIGHT
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre