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fdnapars.1e

Langue: en

Version: 08/04/2009 (ubuntu - 24/10/10)

Section: 1 (Commandes utilisateur)

NAME

fdnapars - DNA parsimony algorithm

SYNOPSIS

fdnapars -sequence seqsetall -intreefile tree [-weights properties] [-maxtrees integer] -thorough toggle -rearrange boolean [-transversion boolean] -njumble integer -seed integer [-outgrno integer] [-thresh toggle] -threshold float -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean] [-stepbox boolean] [-ancseq boolean] [-treeprint boolean] -dotdiff boolean
fdnapars -help

DESCRIPTION

fdnapars

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Phylogeny:Molecular sequence" command group(s).

OPTIONS

Input section

-sequence seqsetall

File containing one or more sequence alignments

-intreefile tree

-weights properties

Additional section

-maxtrees integer

Default value: 10000

-thorough toggle

Default value: Y

-rearrange boolean

Default value: Y

-transversion boolean

Default value: N

-njumble integer

-seed integer

Default value: 1

-outgrno integer

-thresh toggle

Default value: N

-threshold float

Default value: 1.0

Output section

-outfile outfile

-trout toggle

Default value: Y

-outtreefile outfile

-printdata boolean

Default value: N

-progress boolean

Default value: Y

-stepbox boolean

Default value: N

-ancseq boolean

Default value: N

-treeprint boolean

Default value: Y

-dotdiff boolean

Default value: Y

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

fdnapars is fully documented via the tfm(1) system.

AUTHOR

Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

> C'est quoi une image ?
Je sais pas, mais quand j'etais môme il y en avait dans les emballages
de chocolat.
La question qu'est ce que le chocolat me parait déjà plus simple.
-+- Noëlle à Yvan, sur fr.rec.photo -+-