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ggetcds

Langue: en

Version: November 7, 2001 (ubuntu - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME

mollist - get identifiers list
molrev - reverse DNA sequences
molcat - concatenate sequences
molcut - get partial sequences
molmerge - merge sequences
nuc2ptn - DNA -> Amino acid
rminsdel - remove INS/DEL sites
molcodon - get specified codon sites
molinfo - get varied sites
mol2mol - MOLPHY format beautifer
int2mol - Interleaved -> MOLPHY
mol2int - MOLPHY -> Interleaved
mol2phy - MOLPHY -> Sequential
phy2mol - Sequential -> MOLPHY
must2mol - MUST -> MOLPHY
many more perl conversion utilities which are not further described

SYNOPSIS

MolPhy Utilities is a program package for MOLecular PHYlogenetics which includes several Perl utilities:

mollist [sequence_file]
molrev [sequence_file]
molcat [sequence_file]
molcut [sequence_file]
molmerge [sequence_file]
nuc2ptn [switches] [sequence_file]
rminsdel [switches] [sequence_file]
molcodon [sequence_file]
molinfo [switches] [sequence_file]
mol2mol [sequence_file]
inl2mol [sequence_file]
mol2int [sequence_file]
mol2phy [sequence_file]
phy2mol [sequence_file]
must2mol [sequence_file]
ali2mol [sequence_file]
clus2mol [sequence_file]
degene4l [switches] [sequence_file]
degene4 [switches] [sequence_file]
disjoint [sequence_file]
dna2ami [options] [no_align_files]
eali2mol [EMBL_ALIGN_file]
egetcds [EMBL_file]
getcds [EMBL_file]
egetcds [Genbank_file]
info2mol [sequence_file]
infocode [switches] [sequence_file]
infocode [switches] [sequence_file]
mc2mol [sequence_file]
mega2mol [sequence_file]
mol2info [sequence_file]
mol2seq [sequence_file]
molcons [sequence_file]
molsplit [sequence_file]
njt2tpl [machine_readable_tree_with_branch_length]
mol2mol [sequence_file]
nuc2NUC [sequence_file]
rmid3 [switches] [sequence_file]
rmleu [switches] [sequence_file]
rmsyno [switches] [sequence_file]
seq2mol [sequence_file]
seqwrap [file]

DESCRIPTION

This is the Debian GNU/Linux version of the MOLPHY (ProtML) distribution, version 2.3. Copyright (c) 1992-1996, Jun Adachi & Masami Hasegawa. All rights reserved.

MOLPHY is a program package for MOLecular PHYlogenetics.

The perl utilities above are usefull to convert different formats of phylogenetic data.

AUTHOR

This manual page was written by Andreas Tille <tille@debian.org>, for the Debian GNU/Linux system (but may be used by others).
L'histoire et les besoins de communication dans les domaines des
sciences et techniques (comme d'ailleurs dans le commerce, la
diplomatie...) au niveau mondial, ont contribué à rehausser une
langue au premier plan et qu'il importe donc de connaître : c'est
l'anglo-américain.
-+- Joachim Charles Hitzke -+-