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Langue: en

Version: November 7, 2001 (ubuntu - 07/07/09)

Section: 1 (Commandes utilisateur)


mollist - get identifiers list
molrev - reverse DNA sequences
molcat - concatenate sequences
molcut - get partial sequences
molmerge - merge sequences
nuc2ptn - DNA -> Amino acid
rminsdel - remove INS/DEL sites
molcodon - get specified codon sites
molinfo - get varied sites
mol2mol - MOLPHY format beautifer
int2mol - Interleaved -> MOLPHY
mol2int - MOLPHY -> Interleaved
mol2phy - MOLPHY -> Sequential
phy2mol - Sequential -> MOLPHY
must2mol - MUST -> MOLPHY
many more perl conversion utilities which are not further described


MolPhy Utilities is a program package for MOLecular PHYlogenetics which includes several Perl utilities:

mollist [sequence_file]
molrev [sequence_file]
molcat [sequence_file]
molcut [sequence_file]
molmerge [sequence_file]
nuc2ptn [switches] [sequence_file]
rminsdel [switches] [sequence_file]
molcodon [sequence_file]
molinfo [switches] [sequence_file]
mol2mol [sequence_file]
inl2mol [sequence_file]
mol2int [sequence_file]
mol2phy [sequence_file]
phy2mol [sequence_file]
must2mol [sequence_file]
ali2mol [sequence_file]
clus2mol [sequence_file]
degene4l [switches] [sequence_file]
degene4 [switches] [sequence_file]
disjoint [sequence_file]
dna2ami [options] [no_align_files]
eali2mol [EMBL_ALIGN_file]
egetcds [EMBL_file]
getcds [EMBL_file]
egetcds [Genbank_file]
info2mol [sequence_file]
infocode [switches] [sequence_file]
infocode [switches] [sequence_file]
mc2mol [sequence_file]
mega2mol [sequence_file]
mol2info [sequence_file]
mol2seq [sequence_file]
molcons [sequence_file]
molsplit [sequence_file]
njt2tpl [machine_readable_tree_with_branch_length]
mol2mol [sequence_file]
nuc2NUC [sequence_file]
rmid3 [switches] [sequence_file]
rmleu [switches] [sequence_file]
rmsyno [switches] [sequence_file]
seq2mol [sequence_file]
seqwrap [file]


This is the Debian GNU/Linux version of the MOLPHY (ProtML) distribution, version 2.3. Copyright (c) 1992-1996, Jun Adachi & Masami Hasegawa. All rights reserved.

MOLPHY is a program package for MOLecular PHYlogenetics.

The perl utilities above are usefull to convert different formats of phylogenetic data.


This manual page was written by Andreas Tille <>, for the Debian GNU/Linux system (but may be used by others).
nomade Larmor pagailles
l'os de l'araigne rampa mol
alors il pâma régal démon

dame oral mer on gaspilla
nomade gaspillera moral
parler logis nomade a mal

or ma smala plonge là dire
la nage l'immoral rapsode
allegro le piano ramdams

dire la maman oral gospel
là nagea remords malpoli
là elle programma Adonis

adora lampions margelle
orna malgré la psalmodie
la maison de Larmor Plage

-- Chamontin, Élisabeth