hmmindex

Langue: en

Version: 111861 (mandriva - 01/05/08)

Section: 1 (Commandes utilisateur)

Sommaire

NAME

hmmindex - create a binary SSI index for an HMM database

SYNOPSIS

hmmindex [options] database

DESCRIPTION

hmmindex is a utility that creates a binary SSI ("squid sequence index" format) index for an HMM database file called database. The new index file is named database.ssi. An SSI index file is required for hmmfetch to work, and also for the PVM implementation of hmmpfam.

OPTIONS

-h
Print brief help; includes version number and summary of all options, including expert options.

SEE ALSO

Master man page, with full list of and guide to the individual man pages: see hmmer(1).

For complete documentation, see the user guide that came with the distribution (Userguide.pdf); or see the HMMER web page, http://hmmer.wustl.edu/.

 Copyright (C) 1992-2003 HHMI/Washington University School of Medicine.
 Freely distributed under the GNU General Public License (GPL).
See the file COPYING in your distribution for details on redistribution conditions.

AUTHOR

 Sean Eddy
 HHMI/Dept. of Genetics
 Washington Univ. School of Medicine
 4566 Scott Ave.
 St Louis, MO 63110 USA
 http://www.genetics.wustl.edu/eddy/