lastdb

Langue: en

Version: May 2010 (ubuntu - 24/10/10)

Section: 1 (Commandes utilisateur)

NAME

lastdb - genome-scale comparison of biological sequences

SYNOPSIS

lastdb [options] output-name fasta-sequence-file(s)

DESCRIPTION

Prepare sequences for subsequent alignment with lastal.

Main Options: -h: show all options and their default settings -p: interpret the sequences as proteins -c: soft-mask lowercase letters -m: spaced seed pattern

Advanced Options (default settings): -s: volume size (1280 MiB) -w: index step (1) -u: subset seed file -a: user-defined alphabet -b: bucket depth -v: be verbose: write messages about what lastdb is doing

REPORTING BUGS

Report bugs to: last (ATmark) cbrc (dot) jp
LAST home page: http://last.cbrc.jp/