libscanout

Langue: en

Version: 09/25/2007 (debian - 07/07/09)

Section: 1 (Commandes utilisateur)

Sommaire

NAME

libscanout - Reads a DHF file and writes a file of top-scoring Classes, Folds and Superfamilies.

SYNOPSIS

libscanout -dhfinfile infile -outfile outfile
libscanout -help

DESCRIPTION

libscanout

is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). It is part of the "Protein:3D Structure" command group(s).

OPTIONS

Input section

-dhfinfile infile

This option specifies the location of the DHF file (domain hits file) (input). A 'domain hits file' contains database hits (sequences) with domain classification information, in FASTA or EMBL formats. The hits are relatives to a SCOP or CATH family and are found from a search of a sequence database. Files containing hits retrieved by PSIBLAST are generated by using SEQSEARCH.

Required section

Output section

-outfile outfile

This option specifies the location of the summary file (output). The summary file contains lists of domain Classes, Superfamilies and Families rank-ordered on the basis of score (highest-scoring first).

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

libscanout is fully documented via the tfm(1) system.

AUTHOR

Debian EMBOSS Packaging Team <pkg-emboss-devel@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.
Copyright © 2007 Debian EMBOSS Packaging Team

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.