Rechercher une page de manuel

Chercher une autre page de manuel:

miview

Langue: en

Version: January 2010 (ubuntu - 24/10/10)

Section: 1 (Commandes utilisateur)

NAME

miview - Viewer for medical image files

SYNOPSIS

miview [ options ] <image-file>

DESCRIPTION

miview: Viewer for medical image files
File formats are automatically identified by their file extension.

Global options:

-blowup: Enlarge display size by this factor (default=1)
-bright: Relative brightness of display (default=0.0)
-color: Use color map to display values
-contrast: Relative contrast of display (default=0.0)
-dump: Dump all images as bitmap(bmp) files and exit, use the given filename prefix
-low: Lower windowing boundary: This value will appear black in display
-map: Load overlay map (colored voxels superimposed on image) from this file
-maplegend: Export map legend as bitmap to this file
-maplow: Lower windowing boundary for overlay map (default=0.0)
-maprect: Relative size of rectangles which represent voxels of the overlay map (default=0.60)
-mapupp: Upper windowing boundary for overlay map (default=0.0)
-noscale: Disable scale in 2D/3D display
-rec: Record clicked coordinates and values into this file
-upp: Upper windowing boundary: This value will appear white in display
-val: Save value of ROI/point selection to this file
-v <loglevel> or <component:loglevel> for debugging/tracing all components or a single component, respectively. Possible values for loglevel are: 0(noLog), 1(errorLog), 2(warningLog), 3(infoLog), 4(significantDebug), 5(normalDebug), 6(verboseDebug).

fMRI options (Give at least -design and -fmri to activate):

-bonferr: Use Bonferroni correction
-corr: Error probability for correlation (default=1.00000e-03)
-design: Load fMRI design from this file (comma or space separated)
-fmask: fMRI mask file
-fmri: Load fMRI data from this file
-neighb: Minimum next neighbours with significant activation (default=1)

File read options:

-date: Date of scan [yyyymmdd] (default=20100109yyyymmdd)
-fp: FOV in phase direction [mm] (default=220.0mm)
-fr: FOV in read direction [mm] (default=220.0mm)
-fs: FOV in slice direction [mm] (default=5.0mm)
-nr: Number of consecutive measurements (default=1)
-nx: Number of points in read direction (default=1)
-ny: Number of points in phase direction (default=1)
-nz: Number of points in slice direction (default=1)
-pbirth: Patients date of birth [yyyymmdd] (default=00000000yyyymmdd)
-pid: Unique patient identifier (default=Unknown)
-pname: Full patient name (default=Unknown)
-psex: Patients sex (options=M F O , default=O)
-pweight: Patients weight [kg] (default=50.0kg)
-scient: Scientist Name (default=Unknown)
-sd: Inter-slice distance (from center to center) [mm] (default=10.0mm)
-serd: Series Description (default=Unknown)
-serno: Series Number (default=1)
-st: Slice thickness [mm] (default=5.0mm)
-stud: Study Description (default=Unknown)
-tcname: Name of transmit coil (default=Unknown)
-te: Time-to-echo of the sequence [ms] (default=80.0ms)
-time: Time of scan [hhmmss] (default=121904hhmmss)
-tr: Time between consecutive excitations [ms] (default=1000.0ms)
-cplx: Treat data as complex and extract the given component (options=none abs pha real imag , default=none)
-ds: Dataset index to extract if multiple datasets are read
-filter: Read only those datasets which protocol parameter 'key' contains the string 'value' (given in the format 'key=value')
-fmap: For reduced memory usage, keep filemapping after reading (raw) data, but writing into the array will result in a crash
-jdx: If multiple JDX arrays are present, select this
-rdialect: Read data using given dialect of the format. (default is no dialect)
-rf: Read format, use it to override file extension (options=autodetect 3db asc coi dat dcm double float gz hdr ima jdx mag mhd nii ph png pos reg s16bit s32bit s8bit smp u16bit u32bit u8bit v vtk , default=autodetect)
-skip: Skip this amount of bytes before reading the raw data (default=0)

Filters:

-align <filename,In-plane blowup factor> : Align data to the geometry (voxel locations) of an external file
-detrend <Number of low frequency components to be removed> : Remove slow drift over time
-genmask <lower threshold,upper threshold> : Create mask including all voxels with value in given range
-isotrop <voxelsize> : make image voxels isotrop through interpolation (image geometry will not change)
-max <Maximum value> : Clip all values above maximum value
-merge : Merge datasets into a single dataset by expanding the time dimension
-min <Minumum value> : Clip all values below mininum value
-noNaN <Replacement value> : Replaces every NaN by the given value
-pflip : Flip data in phase direction
-prange <Single value or range, optionally with increment (e.g. 1-10:3)> : Select range in phase direction
-resize <slice-size,phase-size,read-size> : Resize image data
-reslice <requested orientation (sagittal coronal axial )> : reslices the image to a given orientation
-rflip : Flip data in read direction
-rot <angle [deg],kernel size [pixel]> : In-plane rotation
-rrange <Single value or range, optionally with increment (e.g. 1-10:3)> : Select range in read direction
-scale <Slope,Offset> : Rescale image values
-sflip : Flip data in slice direction
-shift <readDirection shift [pixel],phaseDirection shift [pixel],sliceDirection shift [pixel]> : Shift data spatially
-splice <dimension of the data to be spliced (time slice phase read none )> : splices the image in the given dimension
-srange <Single value or range, optionally with increment (e.g. 1-10:3)> : Select range in slice direction
-swapdim <[rps][-],[rps][-],[rps][-]> : swap/reflect dimensions by specifying a direction triple with optional reflection sign appended
-tile <columns> : Combine slices into a square 2D image
-trange <Single value or range, optionally with increment (e.g. 1-10:3)> : Select range in time direction
-typemax <Datatype> : Clip all values above maximum of a specific datatype
-typemin <Datatype> : Clip all values below mininum of a specific datatype
-usemask <filename> : Create 1D dataset using mask from file

Supported file extensions(formats):

3db
(Iris3D binary data)
asc
(ASCII)
coi
(JCAMP-DX data sets)
dat
(Matlab ascii 2D data matrix)
dcm
(DICOM, dialects: siemens )
double
(double raw data)
float
(float raw data)
gz
(GNU-Zip container for other formats)
hdr
(NIFTI/ANALYZE, dialects: fsl )
ima
(DICOM, dialects: siemens )
jdx
(JCAMP-DX image format)
mag
(DICOM, dialects: siemens )
mhd
(MetaImage)
nii
(NIFTI/ANALYZE, dialects: fsl )
ph
(DICOM, dialects: siemens )
png
(Portable Network Graphics)
pos
(x-y positions of non-zeroes in ASCII)
reg
(Ansoft HFSS ASCII)
s16bit
(signed 16 bit raw data)
s32bit
(signed 32 bit raw data)
s8bit
(signed 8 bit raw data)
smp
(JCAMP-DX data sets)
u16bit
(unsigned 16 bit raw data)
u32bit
(unsigned 32 bit raw data)
u8bit
(unsigned 8 bit raw data)
v
(Vista, dialects: common odin lipsia )
vtk
(Visualization Toolkit)
Le client devra cliquer en premier sur la croix pour fermer le programme et verra alors
un message publicitaire, indiquant que votre société nous sponsorise, laissant alors
la place à un lien Internet qu'il suffit de retaper dans n'importe quel browser Internet.
-- Jayce - Hypertexte suxor ! --