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ngmx_d
Langue: en
Version: 311302 (ubuntu - 07/07/09)
Section: 1 (Commandes utilisateur)
NAME
ngmx - displays a trajectoryVERSION 4.0.1
SYNOPSIS
ngmx -f traj.xtc -s topol.tpr -n index.ndx -[no]h -nice int -b time -e time -dt timeDESCRIPTION
ngmx is the Gromacs trajectory viewer. This program reads a trajectory file, a run input file and an index file and plots a 3D structure of your molecule on your standard X Window screen. No need for a high end graphics workstation, it even works on Monochrome screens.The following features have been implemented: 3D view, rotation, translation and scaling of your molecule(s), labels on atoms, animation of trajectories, hardcopy in PostScript format, user defined atom-filters runs on MIT-X (real X), open windows and motif, user friendly menus, option to remove periodicity, option to show computational box.
Some of the more common X command line options can be used:
-bg, -fg change colors, -font fontname, changes the font.
FILES
-f traj.xtc InputTrajectory: xtc trr trj gro g96 pdb cpt
-s topol.tpr Input
Run input file: tpr tpb tpa
-n index.ndx Input, Opt.
Index file
OTHER OPTIONS
-[no]hnoPrint help info and quit
-nice int 0
Set the nicelevel
-b time 0
First frame (ps) to read from trajectory
-e time 0
Last frame (ps) to read from trajectory
-dt time 0
Only use frame when t MOD dt = first time (ps)
KNOWN PROBLEMS
- Balls option does not work- Some times dumps core without a good reason
SEE ALSO
gromacs(7)More information about GROMACS is available at <http://www.gromacs.org/>.
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre