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Langue: en

Version: 2007\-04\-04 (debian - 07/07/09)

Section: 1 (Commandes utilisateur)


pc-compare - Program for scoring alignments according to a reference alignment with respect to sum-of-pairs and column scores.


pc-compare [TEST_ALIGNMENT] [REFERENCE_ALIGNMENT] [BALIBASE_ANNOT_FILE] [-col] [-core] [-caps] [-annot FILENAME]


pc-compare is named compare in the original sources, but has been remamed to avoid collision with other program names.


pc-makegnufile(1), pc-project(1),from the probcons-extra package, and probcons(1) and probcons-RNA(1) from the probcons package.


Please cite Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. PROBCONS: Probabilistic Consistency-based Multiple Sequence Alignment. Genome Research 15: 330-340.


Chuong Do <>

Wrote probcons in collaboration with Michael Brudno in the research group of Serafim Batzoglou, Department of Computer Science, Stanford University.

Charles Plessy <>

Wrote this manpage in DocBook XML for the Debian distribution.

This program and its manpage are in the public domain.

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