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protml

Langue: en

Version: November 7, 2001 (ubuntu - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME

MolPhy - program package for MOLecular PHYlogenetics

Molphy consists of several programs:

protml - Maximum Likelihood Inference of Protein Phylogeny
nucml - Maximum Likelihood Inference of Nucleic Acid Phylogeny
protst - Basic Statistics of Protein Sequences
nucst - Basic Statistics of Nucleic Acid Sequence
njdist - Neighbor Joining Phylogeny from Distance Matrix
totalml - Total ML Inference of Molecular Phylogeny

SYNOPSIS

protml [switches] sequence_file [topology_file]
nucml [switches] sequence_file [topology_file]
protst [switches] sequence_file
nucst [switches] sequence_file
njdist [switches] distance_matrix_file
totalml [switches] LLS_files

DESCRIPTION

This is the Debian GNU/Linux version of the MOLPHY (ProtML) distribution, version 2.3. Copyright (c) 1992-1996, Jun Adachi & Masami Hasegawa. All rights reserved.

MOLPHY is a program package for MOLecular PHYlogenetics.

ProtML is a main program in MOLPHY for inferring evolutionary trees from PROTein (amino acid) sequences by using the Maximum Likelihood method.

Each single program has a -h switch which shows some help.

AUTHOR

This manual page was written by Andreas Tille <tille@debian.org>, for the Debian GNU/Linux system (but may be used by others).
Le mal de prendre une hypallage pour une découverte, une métaphore
pour une démonstration, un vomissement de mots pour un torrent de
connaissances capitales, et soi-même pour un oracle, ce mal naît avec
nous.
-+- Paul Valéry -+-