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sim2gff
Langue: en
Version: 250134 (debian - 07/07/09)
Section: 1 (Commandes utilisateur)
NAME
sim2gff - Converts SIM file into GFF formatted recordsSYNOPSIS
sim2gff [-frxyHh] sim_file > gff_fileDESCRIPTION
This manual page documents briefly the sim2gff command.sim2gff is a program written in Perl that converts SIM file into GFF formatted records (for use with gff2aplot and gff2javaplot).
OPTIONS
- -h, --help
- Show summary of options.
- -f
- Output is written to a file named <sim_file>.gff.
- -r
- Interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis).
- -x <name>
- Specify the species name for species1 (default: "Seq1").
- -y <name>
- Specify the species name for species2 (default: "Seq2").
- -H
- Use the fasta file headers for species labels.
EXIT STATUS
The following perl-like exit status are returned:0 Error
1 Successful completion
SEE ALSO
ali2gff(1), blat2gff(1), gff2aplot(1), parseblast(1).AUTHOR
sim2gff was written by Thomas Wiehe <twiehe@imb-jena.de>.This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others).
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