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ugene

NAME

UGENE - integrated bioinformatics tools

SYNOPSIS

ugene [filename]

DESCRIPTION

UGENE is a cross-platform visual environment for DNA and protein sequence analysis. UGENE integrates the most popular bioinformatics computational algorithms and provides an easy-to-use GUI for performing complex analysis of the genomic data.

The main features of UGENE:

*

View and analysis of annotated DNA or protein sequences

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Huge files support, native support of gzipped documents

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Chromatograms visualization and editing

*

Search for ORFs

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Integrated support of search requests to NCBI databases

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Multiple sequence alignment with port of MUSCLE

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Easy-to-use search with HMM profiles using adopted HMMER package

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Integrated 3D viewer for files in PDB format

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Designer for custom computational workflows

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Search for transcription factor binding sites in DNA sequences

UGENE has modular structure and almost all its functionality comes within plugins. Internally UGENE is designed with support of parallelism to make profit from using multicore computers. Every computational task in UGENE is performed in background and does not block user interaction with graphical interface.

OPTIONS

[filename]

Specifies the file to open when UGENE starts. The filename may specify both project file or a single document. If no arguments provided UGENE will start with empty workspace.

SEE ALSO

http://ugene.unipro.ru/manual for user manual.

BUGS

If you find a bug, please report it at ugene@unipro.ru.

AUTHOR

UGENE was created by Unipro (http://unipro.ru)