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velveth_de
Langue: en
Version: May 2010 (ubuntu - 24/10/10)
Section: 1 (Commandes utilisateur)
Sommaire
NAME
velveth - simple hashing program (colorspace version)DESCRIPTION
velveth - simple hashing program Version 0.7.61OPTIONS
- -strand_specific
- : for strand specific transcriptome sequencing data (default: off)
Output:
- directory/Roadmaps directory/Sequences
- [Both files are picked up by graph, so please leave them there]
Version 0.7.61
- -strand_specific
- : for strand specific transcriptome sequencing data (default: off)
Output:
- directory/Roadmaps directory/Sequences
- [Both files are picked up by graph, so please leave them there]
COPYRIGHT
Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Compilation settings: CATEGORIES = 2 MAXKMERLENGTH = 31
Usage: ./velveth directory hash_length {[-file_format][-read_type] filename} [options]
- directory
- : directory name for output files
- hash_length
- : odd integer (if even, it will be decremented) <= 31 (if above, will be reduced)
- filename
- : path to sequence file or - for standard input
File format options:
- -fasta
- -fastq
- -fasta.gz
- -fastq.gz
- -sam
- -bam
- -eland
- -gerald
Read type options:
- -short
- -shortPaired
- -short2
- -shortPaired2
- -long
- -longPaired
- Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)
This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Compilation settings: CATEGORIES = 2 MAXKMERLENGTH = 31
Usage: ./velveth directory hash_length {[-file_format][-read_type] filename} [options]
- directory
- : directory name for output files
- hash_length
- : odd integer (if even, it will be decremented) <= 31 (if above, will be reduced)
- filename
- : path to sequence file or - for standard input
File format options:
- -fasta
- -fastq
- -fasta.gz
- -fastq.gz
- -sam
- -bam
- -eland
- -gerald
Read type options:
- -short
- -shortPaired
- -short2
- -shortPaired2
- -long
- -longPaired
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre