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weight
Langue: en
Version: 262424 (debian - 07/07/09)
Section: 1 (Commandes utilisateur)
NAME
weight - calculates sequence weights for an alignmentSYNOPSIS
weight [-options] <alignment file>DESCRIPTION
This manual page documents briefly the weight command.weight is a program that calculates weights for a sequence alignment.
OPTIONS
Available options:- -b <f>
- Use BLOSUM weighting scheme at <f> fractional identity.
- -f <f>
- Filter out seqs w/ fractional ident > <x> [0-1].
- -h
- Help; print version and usage info.
- -o <file>
- Save weight-annotated alignment in <outfile>.
- -p
- Use position based weight scheme (Henikoff & Henikoff).
- -s <n>
- Sample <n> sequences at random into a new alignment.
- -v
- Use Voronoi weight scheme (Sibbald & Argos).
- --informat <s>
- Specify alignment file format <s>.
Allowed formats: SELEX, MSF, Clustal, a2m, PHYLIP. - --quiet
- Suppress verbose banner.
SEE ALSO
afetch(1), alistat(1), compalign(1), compstruct(1), revcomp(1), seqsplit(1), seqstat(1), sfetch(1), shuffle(1), sindex(1), sreformat(1), stranslate(1),AUTHOR
Sean Eddy HHMI/Department of Genetics Washington University School of Medicine 4444 Forest Park Blvd., Box 8510 St Louis, MO 63108 USA Phone: 1-314-362-7666 FAX : 1-314-362-2157 Email: eddy@genetics.wustl.edu This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others).
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