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Bio::Factory::SequenceFactoryI.3pm
Langue: en
Version: 2008-06-24 (ubuntu - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::Factory::SequenceFactoryI - This interface allows for generic building of sequences in factories which create sequences (like SeqIO)SYNOPSIS
# do not use this object directly it is an interface # get a Bio::Factory::SequenceFactoryI object likeuse Bio::Seq::SeqFactory; my $seqbuilder = new Bio::Seq::SeqFactory('type' => 'Bio::PrimarySeq'); my $seq = $seqbuilder->create(-seq => 'ACTGAT', -display_id => 'exampleseq'); print "seq is a ", ref($seq), "\n";
DESCRIPTION
A generic way to build Sequence objects via a pluggable factory. This reduces the amount of code that looks likeif( $type eq 'Bio::PrimarySeq' ) { ... } elsif( $type eq 'Bio::Seq::RichSeq' ) { ... }
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
http://bugzilla.open-bio.org/
AUTHOR - Jason Stajich
Email jason-at-bioperl.orgAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _create
Title : create Usage : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name'); Function: Instantiates new Bio::PrimarySeqI (or one of its child classes) This object allows us to genericize the instantiation of sequence objects. Returns : Bio::PrimarySeqI Args : initialization parameters specific to the type of sequence object we want. Typically -seq => $str, -display_id => $name
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre