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Bio::Matrix::IO::scoring.3pm
Langue: en
Version: 2009-03-10 (debian - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
Sommaire
NAME
Bio::Matrix::IO::scoring - A parser for PAM/BLOSUM matriciesSYNOPSIS
use Bio::Matrix::IO; my $parser = Bio::Matrix::IO->new(-format => 'scoring', -file => 'BLOSUM50'); my $matrix = $parser->next_matrix;
DESCRIPTION
Describe the object hereFEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:http://bugzilla.open-bio.org/
AUTHOR - Jason Stajich
Email jason-at-bioperl-dot-orgAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _new
Title : new Usage : my $obj = Bio::Matrix::IO::scoring->new(); Function: Builds a new Bio::Matrix::IO::scoring object Returns : an instance of Bio::Matrix::IO::scoring Args :
next_matrix
Title : next_matrix Usage : my $matrux = $parser->next_matrix Function: parses a scoring matrix (BLOSUM,PAM styles) Returns : L<Bio::Matrix::Scoring> Args : none
write_matrix
Title : write_matrix Usage : $matio->write_matrix($matrix) Function: Write out a matrix in the BLOSUM/PAM format Returns : none Args : L<Bio::Matrix::Scoring>
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