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Bio::Matrix::PSM::IO::psiblast.3pm
Langue: en
Version: 2008-01-11 (mandriva - 01/05/08)
Section: 3 (Bibliothèques de fonctions)
NAME
Bio::Matrix::PSM::IO::psiblast - PSM psiblast parserSYNOPSIS
See Bio::Matrix::PSM::IO for documentationDESCRIPTION
Parser for ASCII matrices from PSI-BLAST (blastpgp program in BLAST distribution).FEEDBACK
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AUTHOR - James Thompson
Email tex@biosysadmin.comAPPENDIX
new
Title : new Usage : my $psmIO = new Bio::Matrix::PSM::IO(-format=>'psiblast', -file=>$file); Function: Associates a file with the appropriate parser Throws : Example : Args : Returns : Bio::Matrix::PSM::ProtMatrix->new(@args);
next_psm
Title : next_psm Usage : my $psm = $psmIO->next_psm(); Function: Reads the next PSM from the input file, associated with this object Throws : None Returns : Bio::Matrix::PSM::ProtPsm object Args : none
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