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GO::Parsers::go_ont_parser.3pm
Langue: en
Version: 2006-08-04 (debian - 07/07/09)
Section: 3 (Bibliothèques de fonctions)
NAME
GO::Parsers::go_ont_parser - syntax parsing of GO .ontology flat files
SYNOPSIS
do not use this class directly; use GO::Parser
DESCRIPTION
This generates Stag event streams from one of the various GO flat file formats (ontology, defs, xref, associations). See GO::Parser for detailsExamples of these files can be found at http://www.geneontology.org
A description of the event streams generated follows; Stag or an XML handler can be used to catch these events
GO ONTOLOGY FILES
These files have the .ontology suffix. The stag-schema for the event streams generated look like this:(ontology (source (source_type "s") (source_path "s") (source_mtime "i")) (term+ (id "s") (name "s") (is_root? "i") (relationship+ (type "s") (to "s")) (dbxref* (dbname "s") (acc "s")) (synonym* "s") (secondaryid* "s") (is_obsolete? "i")))
AUTHOR
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre