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SWISS::CCs.3pm
Langue: en
Version: 2008-07-16 (ubuntu - 24/10/10)
Section: 3 (Bibliothèques de fonctions)
Name
SWISS::CCsDescription
SWISS::CCs represents the CC lines within a Swiss-Prot or TrEMBL entry as specified in the user manualhttp://www.expasy.org/sprot/userman.html . The CCs object is a container object which holds a list comprised of object of the type SWISS::CC or derived classes (see below).
Code example
local $/=``\n//\n'';
while (<>) {
my $entry = SWISS::Entry-> fromText($_); my @CCs = $entry -> CCs -> elements(); for my $CC (@CCs) { if ($CC -> topic eq 'ALTERNATIVE PRODUCTS') { # now can call methods of CCalt_prod } elsif ($CC -> topic eq 'Copyright') { # now can call methods of CCcopyright } else { # now can call methods of CC } } }
Inherits from
SWISS::ListBase.pmAttributes
- "list"
- Each list element is an object of one of the following classes, depending of the type of comment:
topic object -------------------- -------------------- ALTERNATIVE PRODUCTS SWISS::CCalt_prod RNA EDITING SWISS::CCrna_editing BIOPHYSICOCHEMICAL PROPERTIES SWISS::CCbpc_properties INTERACTION SWISS::CCinteraction Copyright SWISS::CCcopyright (all other topics) SWISS::CC
Methods
Standard methods
- new
- fromText
- sort
- Sort the CC block according to the order given in Swiss-Prot annotation note ANN017.
- toText
- update
Reading/Writing methods
- ccTopic ($topic)
- Returns true if entry contains a comment block with the specified topic.
- copyright
- Returns a string representation of the copyright text.
- del (@patternList)
- Deletes all comment elements whose topic matches the first element of the pattern list. The second element is the used to specify a requirement for the comment to match as well.
- get (@patternList)
- An array is returned consisting of all comment elements elements whose topic matches any elements of the pattern list.
- getObject (@patternList)
- Same as get, but returns the results wrapped in a new ListBase object.
- toString
- Returns a string representation of the CCs object.
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