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asn2ff
Langue: en
Version: 110408 (mandriva - 01/05/08)
Section: 1 (Commandes utilisateur)
NAME
asn2ff - convert ASN.1 biological data to a flat format (old version)SYNOPSIS
asn2ff [-] [-A X] [-B X] [-C] [-G] [-L F] [-M] [-R] [-V F] [-a filename] [-b] [-d] [-e] [-f b/p/e/s/x/z] [-g] [-h F] [-k F] [-l filename] [-m r/d/s/c/k/l/e/p] [-n F] [-o filename] [-p F] [-q] [-r filename] [-s] [-t] [-v F] [-w] [-y] [-z]DESCRIPTION
asn2ff converts descriptions of biological sequences from NCBI's ASN.1 format to one of several flat-file formats. This program is built around a deprecated interface; please use asn2gbFP(1) instead.OPTIONS
A summary of options is included below.- -
- Print usage message
- -A X
- Show region starting at X (default is 0)
- -B X
- Show region ending at X (default is last position)
- -C
- Show Bankit comments
- -G
- Output is one top bioseq only in genome view
- -L F
- Use old (pre-Genbank 127.0) LOCUS line format
- -M
- Output is map bioseqs only
- -R
- For GenBank Release
- -V F
- Don't use VERSION
- -a filename
- Filename for ASN.1 input (default is stdin)
- -b
- Input asnfile in binary mode
- -d
- Use SeqMgr indexing
- -e
- Input is a Seq-entry
- -f b/p/e/s/x/z
- Output Format:
-
- b
- GenBank (default)
- p
- GenPept
- e
- EMBL
- s
- PseudoEMBL
- x
- GenBankSelect
- z
- EMBLPEPT
-
- -g
- Show gi numbers
- -h F
- Hide sequence
- -k F
- Don't use complex sets (phy-set,mut-set, pop-set)
- -l filename
- Log errors to filename
- -m r/d/s/c/k/l/e/p
- Output mode:
-
- r
- release (default)
- d
- dump
- s
- Sequin
- c
- Chromoscope
- k
- dir-sub-debug
- l
- dir-sub
- e
- revise
- p
- partial report
-
- -n F
- Strict gene_binding
- -o filename
- Output Filename (default is stdout)
- -p F
- Omit new gene features
- -q
- Output is one top bioseq only
- -r filename
- Output error logfile (default is stderr)
- -s
- Input is a Seq-submit
- -t
- Show verbose message text
- -v F
- Suppress error messages
- -w
- Use HTML output format
- -y
- Print help format only
- -z
- New algorithm for orgnames
AUTHOR
The National Center for Biotechnology Information.SEE ALSO
asn2all(1), asn2asn(1), asn2fsa(1), asn2gb(1), asn2xml(1), asndhuff(1).Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre