nps2gps

Langue: en

Version: 312660 (ubuntu - 07/07/09)

Section: 1 (Commandes utilisateur)

NAME

nps2gps - convert nucleotide-protein sets to ASN.1 genomic product sets

SYNOPSIS

nps2gps [-] [-F] [-L] [-P] [-R] [-f str] [-i filename] [-o filename] [-p path] [-r path] [-x str]

DESCRIPTION

nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it outputs as text ASN.1.

OPTIONS

A summary of options is included below.
-
Print usage message
-F
Map by Feature ID
-L
Lock components in advance
-P
mRNA ID from Protein
-R
Enable Remote fetching from ID
-f str
Substring filter
-i filename
Single input file (default = stdin)
-o filename
Single output file (default = stdout)
-p path
Path to files for batch conversion
-r path
Path for results of batch conversion
-x str
File selection suffix for batch conversion (default = .ent)

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1).