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gp_pattern
Langue: en
Version: 111686 (mandriva - 01/05/08)
Section: 1 (Commandes utilisateur)
NAME
gp_pattern - computate frequencies of nucleotide patternsSYNOPSIS
[-H] [-q] [-v] [-d] [-h] [inputfile] [outputfile]OPTIONS
- -l value
- set pattern length
- -H
- Output in HTML mode
- -v
- Prints the version information.
- -q
- Do not display error messages
- -d
- Prints lots of debugging information.
- -h
- Shows usage information.
- inputfile
- file to proces; if not given, will use standard input
- outputfile
- file to write the data to; if not given, will use standard output
DESCRIPTION
gp_dimer records frequencies of patterns. The pattern length is set with the -l option. Beware: the number of possible patterns grows exponentially, so setting pattern length greater then 6 can be dangerous. You must use this program only with DNA/RNA sequences.
SEE ALSO
Genpak(1) gp_acc(1) gp_adjust(1) gp_cdndev(1) gp_cusage(1) gp_digest(1) gp_dimer(1) gp_findorf(1) gp_gc(1) gp_getseq(1) gp_map(1) gp_matrix(1) gp_mkmtx(1) gp_primer(1) gp_qs(1) gp_randseq(1) gp_seq2prot(1) gp_slen(1) gp_tm(1) gp_trimer(1)DIAGNOSTICS
All Genpak programs complain in situations you would also complain, like when they cannot find a sequence you gave them or the sequence is not valid.
The Genpak programs do not write over existing files. I have found this feature very useful :-)
BUGS
I'm sure there are plenty left, so please mail me if you find them. I tried to clean up every bug I could find.
AUTHOR
January Weiner III <january@bioinformatics.org>
Contenus ©2006-2024 Benjamin Poulain
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