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gp_slen

Langue: en

Version: 111691 (mandriva - 01/05/08)

Section: 1 (Commandes utilisateur)

NAME

gp_slen - print a DNA / RNA / protein sequence length

SYNOPSIS

gp_slen [-m] [-q] [-v] [-d] [-h] [inputfile] [outputfile]

OPTIONS

-m
print only a total mean and standard error of sequence lengths.
-v
Prints the version information.
-d
Prints lots of debugging information.
-h
Shows usage information.
inputfile
file to proces; if not given, will use standard input
outputfile
file to write the data to; if not given, will use standard output

DESCRIPTION

gp_slen prints the length of each read sequence, or the mean and standard error of sequence lengths. If the option -m is specified, but only one sequence has been read, an error occurs.

SEE ALSO

Genpak(1) gp_acc(1) gp_adjust(1) gp_cdndev(1) gp_cusage(1) gp_digest(1) gp_dimer(1) gp_findorf(1) gp_gc(1) gp_getseq(1) gp_map(1) gp_matrix(1) gp_mkmtx(1) gp_pattern(1) gp_primer(1) gp_qs(1) gp_randseq(1) gp_seq2prot(1) gp_tm(1) gp_trimer(1)

DIAGNOSTICS

All Genpak programs complain in situations you would also complain, like when they cannot find a sequence you gave them or the sequence is not valid.

The Genpak programs do not write over existing files. I have found this feature very useful :-)

BUGS

I'm sure there are plenty left, so please mail me if you find them. I tried to clean up every bug I could find.

AUTHOR

January Weiner III <january@bioinformatics.org>

"Je me rappelle bien la splendeur de leurs bannières", reprit Elrond.
"Elle me rappelait la gloire des Jours Anciens et les armées de
Beleriand, où tant de grands princes et capitaines étaient assemblés.
Et pourtant pas tant, pas si beaux que lorsque Thangorodrim fut brisé
et que les Elfes pensèrent que le mal était fini à jamais, alors que
ce n'était pas vrai."
-- J.R.R. Tolkien, "La Communauté de l'Anneau"